The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics

The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics

Source :

• Environmental Microbiology [ 1462-2912 ] ; 2009-10.

Descripteurs français

• Wicri :
  • topic : Changement climatique, Milieu marin.

English descriptors

• KwdEn :
  • Abundance, Abundance ratio, Acid aminotransferase, Adaptive, Adaptive response, Alaskensis, Antitermination protein nusg, Appl, Appl environ microbiol, Bacterium, Beta subunit, Biol chem, Biological replicates, Biosystems, Blackwell publishing, Cavicchioli, Cellular, Cellular levels, Cellular location, Cellular processes, Ch3cn formic acid, Chaperone, Chaperonin protein, Chaperonin_groes protein, Charge state, Climate change, Coli, Colour code, Common proteins, Component beta subunit, Computational analyses, Dantas caldas, Dark control, Different growth conditions, Different light treatments, Differential abundance, Differential protein abundance, Elongation factor, Environ, Environmental microbiology, Escherichia coli, Family protein, Fegatella, Formic acid, Functional relationships, Gene expression, Genome sequence, Glutamine synthetase, Glyoxalase, Growth conditions, Growth phase, Heat shock protein, Hierarchical cluster analysis, Higher abundance, Host factor subunit, Hydrogen peroxide, Hydrogen peroxide resistance, Interaction networks, Iron homeostasis, Iron storage, Irradiation conditions, Irradiation treatment, Irradiation treatments, Isobaric tags, Itraq, Itraq labelling, Itraq reagents, Joux, Light conditions, Light exposure, Light treatment, Light treatments, Liquid chromatography tandem mass spectrometry, Long exposure, Lower abundance, Manual annotation, Marine bacteria, Marine bacterium, Marine bacterium sphingopyxis alaskensis, Marine ecosystems, Marine environment, Marine oligotrophic ultramicrobacterium, Membrane lipoprotein, Metabolic pathways, Metabolism, Methanococcoides burtonii, Michrom bioresources, Microb ecol, Microbiol, Microbiology, Ml8h, Ml8h cells, Ml8h treatment, Molecular mechanisms, Nitrogen metabolism, Nucleic acids, Nutrient limitation, Ocean waters, Oligotrophic, Ompa, Ompa family, Ostrowski, Outer membrane protein ompa, Oxidative, Oxidative damage, Oxidative stress, Oxidative stress response, Pathway, Peptide, Periplasmic family protein, Perkin elmer, Pfkb family carbohydrate kinase_putative adenosine kinase, Photochem photobiol, Polymerase subunit omega, Positive gravy indices, Precursor, Previous studies, Proc natl acad, Protein, Protein abundance, Protein abundance changes, Protein dnak, Protein extraction, Protein family, Protein samples, Protein synthesis, Proteome, Proteomic, Proteomic analysis, Proteomic changes, Proteomic response, Proteomics, Proteomics data sets, Qstar pulsar, Quantitative differences, Quantitative proteomics, Quantitative proteomics data, Raftery, Ratio ratio, Ratio values, Reactive oxygen species, Receptor, Relative protein rate, Ribosomal, Ribosomal protein, Ribosomal proteins, Room temperature, Sample mixture, Sapc protein, Sequence identity, Serine endopeptidase_putative degs stress sensor, Short exposure, Siderophore receptor, Signal transduction proteins, Similar number, Solar radiation, Solar simulator, Sp8h, Sp8h cells, Sp8h treatment, Sphingomonas alaskensis, Sphingopyxis, Sphingopyxis alaskensis, Stationary phase, Stress response protein, String database, Subunit, Sunlight exposure, Superoxide dismutase, Theoretical proteome, Total number, Transcription, Transcriptional regulation, Transfer flavoprotein, Ultraviolet radiation, Uncharacterized, Uncharacterized protein, Viability, Visible light.
• Teeft :
  • Abundance, Abundance ratio, Acid aminotransferase, Adaptive, Adaptive response, Alaskensis, Antitermination protein nusg, Appl, Appl environ microbiol, Bacterium, Beta subunit, Biol chem, Biological replicates, Biosystems, Blackwell publishing, Cavicchioli, Cellular, Cellular levels, Cellular location, Cellular processes, Ch3cn formic acid, Chaperone, Chaperonin protein, Chaperonin_groes protein, Charge state, Climate change, Coli, Colour code, Common proteins, Component beta subunit, Computational analyses, Dantas caldas, Dark control, Different growth conditions, Different light treatments, Differential abundance, Differential protein abundance, Elongation factor, Environ, Environmental microbiology, Escherichia coli, Family protein, Fegatella, Formic acid, Functional relationships, Gene expression, Genome sequence, Glutamine synthetase, Glyoxalase, Growth conditions, Growth phase, Heat shock protein, Hierarchical cluster analysis, Higher abundance, Host factor subunit, Hydrogen peroxide, Hydrogen peroxide resistance, Interaction networks, Iron homeostasis, Iron storage, Irradiation conditions, Irradiation treatment, Irradiation treatments, Isobaric tags, Itraq, Itraq labelling, Itraq reagents, Joux, Light conditions, Light exposure, Light treatment, Light treatments, Liquid chromatography tandem mass spectrometry, Long exposure, Lower abundance, Manual annotation, Marine bacteria, Marine bacterium, Marine bacterium sphingopyxis alaskensis, Marine ecosystems, Marine environment, Marine oligotrophic ultramicrobacterium, Membrane lipoprotein, Metabolic pathways, Metabolism, Methanococcoides burtonii, Michrom bioresources, Microb ecol, Microbiol, Microbiology, Ml8h, Ml8h cells, Ml8h treatment, Molecular mechanisms, Nitrogen metabolism, Nucleic acids, Nutrient limitation, Ocean waters, Oligotrophic, Ompa, Ompa family, Ostrowski, Outer membrane protein ompa, Oxidative, Oxidative damage, Oxidative stress, Oxidative stress response, Pathway, Peptide, Periplasmic family protein, Perkin elmer, Pfkb family carbohydrate kinase_putative adenosine kinase, Photochem photobiol, Polymerase subunit omega, Positive gravy indices, Precursor, Previous studies, Proc natl acad, Protein, Protein abundance, Protein abundance changes, Protein dnak, Protein extraction, Protein family, Protein samples, Protein synthesis, Proteome, Proteomic, Proteomic analysis, Proteomic changes, Proteomic response, Proteomics, Proteomics data sets, Qstar pulsar, Quantitative differences, Quantitative proteomics, Quantitative proteomics data, Raftery, Ratio ratio, Ratio values, Reactive oxygen species, Receptor, Relative protein rate, Ribosomal, Ribosomal protein, Ribosomal proteins, Room temperature, Sample mixture, Sapc protein, Sequence identity, Serine endopeptidase_putative degs stress sensor, Short exposure, Siderophore receptor, Signal transduction proteins, Similar number, Solar radiation, Solar simulator, Sp8h, Sp8h cells, Sp8h treatment, Sphingomonas alaskensis, Sphingopyxis, Sphingopyxis alaskensis, Stationary phase, Stress response protein, String database, Subunit, Sunlight exposure, Superoxide dismutase, Theoretical proteome, Total number, Transcription, Transcriptional regulation, Transfer flavoprotein, Ultraviolet radiation, Uncharacterized, Uncharacterized protein, Viability, Visible light.

Abstract

• https://api.istex.fr/document/B9D93EEBDAD46D694822C16DFF371EABA9CEC2FC/fulltext/pdf

Affiliations:

• Australie, France
• Languedoc-Roussillon, Occitanie (région administrative), Île-de-France
• Banyuls‐sur‐mer, Paris
• Université Pierre-et-Marie-Curie

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